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Address: Otfried-Müller-Straße 10
72076 Tübingen


Founding Director

frontend.sr-only_#{element.icon}: +49 7071 29-82168
Prof. Dr. Julia Skokowa


frontend.sr-only_#{element.icon}: julia.skokowa@med.uni-tuebingen.de


Scientific coordinator

frontend.sr-only_#{element.icon}: +49 7071 29-86013
Dr. Olga Klimenkova


frontend.sr-only_#{element.icon}: Olga.Klimenkova@med.uni-tuebingen.de


AG Stafforst

Prof. Thorsten Stafforst

Interfaculty Institute of Biochemistry

Person profile: More about the person

RNA Base Editing

Site-directed RNA base editing is a novel approach for reprogramming genetic information. It employs adenosine-to-inosine deamination to introduce – in a very precise and programmable way – point mutations at the RNA level. Our lab has contributed pioneering work to the field by engineering the first programmable RNA base editor (Stafforst et al., Angew. Chem. 2012). Within the GRTC, we focus mainly on the harnessing of the endogenous ADAR proteins for therapeutic purposes. For this, we recently established two different approaches. One approach applies chemically defined and manufactured so-called RESTORE antisense oligonucleotides and will be optimized for eye and liver indications (Merkle et al., Nature Biotech. 2019). The other approach applies virally delivered, so-called CLUSTER guide RNAs, which will be optimized for CNS indications (Reautschnig et al., Nature Biotech 2022). The work is supported by local and international collaborations and generous third-party funding.

GRT projects

a) Development of ADAR recruiting RESTORE ASOs for liver and eye indications

b) Development of ADAR recruiting CLUSTER guide RNAs for CNS indications 


GRT expertise

Bioengineering, RNA Biochemistry, guide RNA engineering, ASO design, Nucleic acid chemistry


Main GRT methods applied in the lab

Engineering RNA base editing technology, oligonucleotide design, preclinical chemical and biochemical research


Ongoing and requested funding

  • DFG (STA 1053/10-1, STA 1053/13-1, STA 1053/14-1)
  • EU (PoC, #101069246)
  • VWStiftung (Momentum Program, #96876)
  • International Rett Syndrome Foundation (grant #3806)

Publications

  • (1) CLUSTER guide RNAs enable precise and efficient RNA editing in cell culture and in vivo. P. Reautschnig, N. Wahn, J. Wettengel, A. E. Schulz, N. Latifi, P. Vogel, T.-W. Kang, L. S. Pfeiffer, C. Zarges, U. Naumann, L. Zender, J. B. Li and T. Stafforst, Nature Biotech. 2022, in print; https://www.nature.com/articles/s41587-021-01105-0
  • (2) Precise RNA editing by recruiting endogenous ADARs with antisense oligonucleotides.T. Merkle, S. Merz, P. Reautschnig, A. Blaha, Q. Li, P. Vogel, J. Wettengel, J. B. Li, T. Stafforst, Nature Biotech. 2019, 37, 133-138. https://www.nature.com/articles/s41587-019-0013-6
  • (3) Efficient and Precise Editing of Endogenous Transcripts with SNAP-tagged ADARs. P. Vogel, M. Moschref, Q. Li, T. Merkle, K. D. Selvasaravanan, J. B. Li, T. Stafforst. Nature Methods 2018, 15, 535-38. https://www.nature.com/articles/s41592-018-0017-z
  • (4) An RNA-Deaminase Conjugate Selectively Repairs Point Mutations. T. Stafforst, M. F. Schneider, Angew. Chem. Int. Ed. 2012, 51, 11166-9. https://onlinelibrary.wiley.com/doi/10.1002/anie.201206489
     



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