Translational Gastrointestinal Oncology and Metabolism

Our research focuses on two connected areas of translational medicine: upper gastrointestinal oncology and metabolic surgery. In both, we link clinical observations with molecular research to support more personalized patient care.

Upper Gastrointestinal Oncology

We study interactions between different intratumoral cell populations, including epithelial tumor cells and cancer-associated fibroblasts (CAFs). We investigate how these interactions contribute to disease progression, metastasis, and treatment resistance. To explore these mechanisms, we study heterogeneity within and between esophageal, gastroesophageal junction, and gastric adenocarcinomas and map the cellular organization of their tumor microenvironment. Using patient-derived organoids and tissue slice cultures, we test current chemo- and immunotherapies to assess treatment responses and investigate ways to target tumor escape mechanisms.

Metabolic and Bariatric Surgery Research

We analyze disease mechanisms and clinical and molecular biomarkers in obesity, MASLD, and MASH, with a focus on predicting surgical outcomes and understanding differences in tissue remodeling between patients. As surgeon-scientists, we combine clinical care with systematic collection of blood, tissue, and stool around surgery. By following long-term changes in the metabolome, lipid composition, microbiome, and immune cell profiles, we seek predictive markers and investigate systemic immune-mediated disease processes.

Across both research areas, we combine single-cell RNA sequencing, FACS-sorted transcriptomics, and spatial metabolomics with long-term clinical data to inform individualized clinical strategies.

About us

PD Dr. med. Patrick Sven Plum is a visceral surgeon and translational scientist specializing in upper gastrointestinal and metabolic surgery. He works at the Department of General, Visceral and Transplant Surgery in Tübingen, following earlier roles in surgery and research at the University Hospital Cologne and the University of Leipzig. His research combines clinical surgical data with molecular and spatial tissue profiling.

He uses single-cell RNA, FACS-sorted and CITE sequencing to study the tumor microenvironment of upper gastrointestinal adenocarcinomas and metabolic changes after bariatric surgery. His work includes cost-effective methods for analyzing clinical tissue samples, with the aim of improving diagnosis and treatment of cancer and metabolic disorders. His awards include the Walter Krienitz Prize, the Julius Springer Prize for Surgery, the DGAV Theodor Billroth Prize and the ESDE Best Abstract Award.

  • Deutsche Forschungsgemeinschaft (DFG) - Projektnummer: 264590883 Mehr erfahren
OGI Oncology
Cellular heterogeneity and tumor microenvironment of upper gastrointestinal adenocarcinomas
Metabolic Surgery
Longitudinal clinical and molecular profiling in bariatric and metabolic interventions
Spatial Multi-Omics
High-resolution transcriptomic tracking and systemic immunometabolic profiling

Selected Publications